Mercurial > repos > jjohnson > qiime
view adjust_seq_orientation.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
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date | Sun, 17 Jul 2011 10:30:11 -0500 |
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<tool id="adjust_seq_orientation" name="adjust_seq_orientation" version="1.2.0"> <description>Get the reverse complement of all sequences</description> <requirements> <requirement type="binary">adjust_seq_orientation.py</requirement> </requirements> <command interpreter="python"> qiime_wrapper.py --galaxy_tmpdir='$__new_file_path__' adjust_seq_orientation.py --input_fasta_fp=$input_fasta_fp --output_fp=$output_fp $retain_seq_id </command> <inputs> <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp" help="path to the input fasta file [REQUIRED]"/> <param name="retain_seq_id" type="boolean" truevalue="--retain_seq_id" falsevalue="" checked="false" label="retain_seq_id" help="leave seq description lines untouched [default: append ' RC' to seq description lines]"/> </inputs> <outputs> <data format="txt" name="output_fp" label="${tool.name} on ${on_string}: (RC)"/> </outputs> <tests> </tests> <help> </help> </tool>