view consensus_tree.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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<tool id="consensus_tree" name="consensus_tree" version="1.2.0">
 <description>This script outputs a majority consensus tree given a collection of input trees.</description>
 <requirements>
  <requirement type="binary">consensus_tree.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  consensus_tree.py
  --input_dir=$input_dir
  --output_fname=$output_fname
  $strict
 </command>
 <inputs>
  <param name="input_dir" type="text"  label="input_dir"
   help="input folder containing trees [REQUIRED]"/>
  <param name="strict" type="boolean" truevalue="--strict" falsevalue="" checked="false" label="strict"
   help="Use only nodes occurring }50% of the time [default: False]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fname"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>