<tool id="transform_coordinate_matrices" name="transform_coordinate_matrices" version="1.2.0">
 <description>Transform 2 coordinate matrices</description>
 <requirements>
  <requirement type="binary">transform_coordinate_matrices.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  transform_coordinate_matrices.py
  --input_fps=$input_fps
  --output_dir=$__new_file_path__
  --random_trials=$random_trials
  --num_dimensions=$num_dimensions
  --sample_id_map_fp=$sample_id_map_fp
  $store_trial_details
 </command>
 <inputs>
  <param name="input_fps" type="text"  label="input_fps"
   help="comma-separated input files [REQUIRED]"/>
  <param name="random_trials" type="integer" value="-1" label="random_trials"
   help="Number of random permutations of matrix2 to perform.  [default: (no Monte Carlo analysis performed)]"/>
  <param name="num_dimensions" type="integer" value="-1" label="num_dimensions"
   help="Number of dimensions to include in output matrices [default: Consider all dimensions]"/>
  <param name="sample_id_map_fp" type="data" format="tabular" label="sample_id_map_fp"
   help="Map of original sample ids to new sample ids [default: %default]"/>
  <param name="store_trial_details" type="boolean" truevalue="--store_trial_details" falsevalue="" checked="false" label="store_trial_details"
   help="Store PC matrices for individual trials [default: False]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>