view convert_otu_table_to_unifrac_sample_mapping.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
parents
children
line wrap: on
line source

<tool id="convert_otu_table_to_unifrac_sample_mapping" name="convert_otu_table_to_unifrac_sample_mapping" version="1.2.0">
 <description>Convert a QIIME OTU table to a UniFrac sample mapping file</description>
 <requirements>
  <requirement type="binary">convert_otu_table_to_unifrac_sample_mapping.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  convert_otu_table_to_unifrac_sample_mapping.py
  --otu_table_fp=$otu_table_fp
  --output_fp=$output_fp
 </command>
 <inputs>
  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
   help="path to the otu table [REQUIRED]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fp"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>