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1 <?xml version="1.0"?>
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2 <tool id="sqlite_to_tabular" name="SQLite to tabular" version="5.0.0">
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3 <description>for SQL query</description>
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4
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8
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9 <stdio>
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10 <exit_code range="1:" level="fatal" description="Error" />
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11 </stdio>
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12 <command><![CDATA[
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13 python $__tool_directory__/sqlite_to_tabular.py
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14 --sqlitedb="$sqlitedb"
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15 --query_file="$query_file"
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16 $no_header
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17 --output="$query_results"
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18 ]]></command>
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19 <configfiles>
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20 <configfile name="query_file">
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21 $sqlquery
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22 </configfile>
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23 </configfiles>
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24 <inputs>
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25 <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
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26 <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
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27 <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator>
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28 <sanitizer sanitize="False"/>
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29 </param>
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30 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/>
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31 </inputs>
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32 <outputs>
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33 <data name="query_results" format="tabular" />
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34 </outputs>
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35 <tests>
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36 <test>
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37 <param name="sqlitedb" ftype="sqlite" value="testdb.sqlite" />
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38 <param name="sqlquery" value="SELECT first_name, last_name, age FROM contacts WHERE first_name = 'Sam'" />
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39 <output name="query_results">
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40 <assert_contents>
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41 <has_text text="Smith" />
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42 <not_has_text text="Doe" />
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43 </assert_contents>
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44 </output>
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45 </test>
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46 </tests>
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47 <help><![CDATA[
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48 =================
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49 SQLite to Tabular
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50 =================
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51
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52 **Inputs**
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53
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54 An existing SQLite_ data base.
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55
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56
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57 **Outputs**
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58
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59 The results of a SQL query are output to the history as a tabular file.
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60
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61
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62
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63 @QUERY_HELP@
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64
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65 ]]></help>
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66 </tool>
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