annotate tool-data/snpeffect_regulationdb.loc.sample @ 8:13b6ad2ddace

SnpEffect v3.2
author Jim Johnson <jj@umn.edu>
date Mon, 13 May 2013 12:45:07 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1 ## Databases for SnpEff
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 ## These are from the list on: http://snpeff.sourceforge.net/download.html
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
3 ## the Description field in this sample is "Genome : Version"
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
4 #Genome Regulation_Name
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
5 GRCh37.70 CD4
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
6 GRCh37.70 GM06990
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
7 GRCh37.70 GM12878
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
8 GRCh37.70 H1ESC
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
9 GRCh37.70 HMEC
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
10 GRCh37.70 HSMM
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
11 GRCh37.70 HUVEC
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
12 GRCh37.70 HeLa-S3
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
13 GRCh37.70 HepG2
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
14 GRCh37.70 IMR90
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
15 GRCh37.70 K562
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
16 GRCh37.70 K562b
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
17 GRCh37.70 NH-A
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
18 GRCh37.70 NHEK
13b6ad2ddace SnpEffect v3.2
Jim Johnson <jj@umn.edu>
parents:
diff changeset
19