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comparison tool_dependencies.xml @ 8:13b6ad2ddace

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SnpEffect v3.2
author Jim Johnson <jj@umn.edu>
date Mon, 13 May 2013 12:45:07 -0500
parents 192a236898f5
children 937367efb1da
comparison
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7:b26a1aff7f81 8:13b6ad2ddace
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="snpEff" version="3.1"> 3 <package name="snpEff" version="3.2">
4 <install version="1.0"> 4 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="snpeff_3_2" owner="jjohnson" changeset_revision="8ece49cfe180" />
5 <actions>
6 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
7 <action type="move_directory_files">
8 <source_directory>.</source_directory>
9 <destination_directory>$INSTALL_DIR</destination_directory>
10 </action>
11 <action type="set_environment">
12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
13 </action>
14 <action type="set_environment">
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
16 </action>
17 </actions>
18 </install>
19 <readme>
20 </readme>
21 </package> 5 </package>
22 </tool_dependency> 6 </tool_dependency>
7