--- a/tool_dependencies.xml	Thu Mar 28 12:29:45 2013 -0500
+++ b/tool_dependencies.xml	Mon May 13 12:45:07 2013 -0500
@@ -1,22 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="snpEff" version="3.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
-                <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
+    <package name="snpEff" version="3.2">
+        <repository toolshed="http://toolshed.g2.bx.psu.edu" name="snpeff_3_2" owner="jjohnson" changeset_revision="8ece49cfe180" />
     </package>
 </tool_dependency>
+