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changeset 2:a9bae7957c36

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Fix typo on caseControl in commandline
author Jim Johnson <jj@umn.edu>
date Wed, 30 Jan 2013 17:29:10 -0600
parents 2c595fea585c
children 3b0c657b852b
files snpSift_caseControl.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/snpSift_caseControl.xml	Wed Jan 30 16:20:32 2013 -0600
+++ b/snpSift_caseControl.xml	Wed Jan 30 17:29:10 2013 -0600
@@ -8,7 +8,7 @@
                 <requirement type="package" version="3.1">snpEff</requirement>
 	</requirements>
 	<command>
-		java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar casControl -q $hhCase $hhControl '$caseControStr' $input > $output
+		java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar caseControl -q $hhCase $hhControl '$caseControStr' $input > $output
 	</command>
 	<inputs>
 		<param format="vcf" name="input" type="data" label="VCF input"/>