Mercurial > repos > jjohnson > snpeff_cds_report

annotate README @ 0:cdbdac66d6b5

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author jjohnson
date Tue, 12 Mar 2013 13:59:14 -0400
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1 snpeff_cds_report reports the protein coding changes that result from frame shift and non_synonymous variants.
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jjohnson
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2 It requires the input to be from the MMuFF (Missense Mutation and Frameshift Finder) workflow.
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3 Specifically it requires the input from snpEff ( http://snpeff.sourceforge.net/ ) set with an Ensembl genome build,
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4 which will annotate variants with Ensembl transctipt IDs.