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1 qualimap - 1.0.0
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2 =====================================================================
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3 <joachim.jacob@vib.be>
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4
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5 SUMMARY
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6 -------
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7 Qualimap examines sequencing alignment data in SAM/BAM files and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis.
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8
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9 http://qualimap.bioinfo.cipf.es/
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10
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11 Garcia-Alcalde et.al, (2012) Qualimap: evaluating next generation sequencing aligmnent data,
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12 Bioinformatics. doi: 10.1093/bioinformatics/bts503
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13
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14 REQUIREMENTS AND INSTALLATION
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15 -----------------------------
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16 Install this tool in your Galaxy via the Toolshed
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17
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18 ) Third party code installation
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19 Required: qualimap JAR archives.
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20
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21 ) Integration into Galaxy
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22 Please use the toolshed
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23
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24 DETAILS AND ISSUES
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25 ------------------
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26 ) Only bamqc provided in this first version
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27 ) bamqc: allow passing number of threads, and take into account number of 'chunks'
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28 ) bamqc:
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29
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30 =====================================================================
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