Mercurial > repos > joachim-jacob > qualimap_suite
comparison README @ 2:934cd08c77af draft
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| author | joachim-jacob |
|---|---|
| date | Tue, 12 Feb 2013 04:48:36 -0500 |
| parents | |
| children | 3d690162d629 |
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| 1:59c0a4f9c9ff | 2:934cd08c77af |
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| 1 qualimap - 1.0.0 | |
| 2 ===================================================================== | |
| 3 <joachim.jacob@vib.be> | |
| 4 | |
| 5 SUMMARY | |
| 6 ------- | |
| 7 Qualimap examines sequencing alignment data in SAM/BAM files and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis. | |
| 8 | |
| 9 http://qualimap.bioinfo.cipf.es/ | |
| 10 | |
| 11 Garcia-Alcalde et.al, (2012) Qualimap: evaluating next generation sequencing aligmnent data, | |
| 12 Bioinformatics. doi: 10.1093/bioinformatics/bts503 | |
| 13 | |
| 14 REQUIREMENTS AND INSTALLATION | |
| 15 ----------------------------- | |
| 16 Install this tool in your Galaxy via the Toolshed | |
| 17 | |
| 18 ) Third party code installation | |
| 19 Required: qualimap JAR archives. | |
| 20 | |
| 21 ) Integration into Galaxy | |
| 22 Please use the toolshed | |
| 23 | |
| 24 DETAILS AND ISSUES | |
| 25 ------------------ | |
| 26 ) Only bamqc provided in this first version | |
| 27 ) bamqc: allow passing number of threads, and take into account number of 'chunks' | |
| 28 ) bamqc: | |
| 29 | |
| 30 ===================================================================== |