Mercurial > repos > joachim-jacob > qualimap_suite

diff README @ 4:3d690162d629 draft

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Added more details for the required dependencies.
author Joachim Jacob <joachim.jacob@gmail.com>
date Wed, 20 Mar 2013 09:35:07 +0100
parents 934cd08c77af
children f6ffb9aa409e
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--- a/README	Tue Feb 12 04:50:47 2013 -0500
+++ b/README	Wed Mar 20 09:35:07 2013 +0100
@@ -1,4 +1,4 @@
-qualimap - 1.0.0
+qualimap - 1.0.1
 =====================================================================
 <joachim.jacob@vib.be>
 
@@ -15,16 +15,19 @@
 -----------------------------
 Install this tool in your Galaxy via the Toolshed
 
-   ) Third party code installation
-	Required: qualimap JAR archives.  
+   ) Required dependencies:
+	- Qualimap available in the PATH
+	- Perl 
+	- Perl core module File::Temp and File::Basename
+	- Perl module Log::Log4perl	
 
    ) Integration into Galaxy
 	Please use the toolshed
 
 DETAILS AND ISSUES
 ------------------
-   ) Only bamqc provided in this first version
-   ) bamqc: allow passing number of threads, and take into account number of 'chunks'
-   ) bamqc: 
+   ) Qualimap suite provide various quality control tools to apply 
+     after mapping. Only bamqc is provided in this first version
+   ) bamqc reports various statistics of an alignment.
 
 =====================================================================