annotate fastaselect.sh @ 3:17a8f8670dc9 draft

Uploaded new fastaselect wrapper
author john-mccallum
date Wed, 26 Jun 2013 22:41:45 -0400
parents 13656c2d7c73
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
1 #!/bin/env sh
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
2 ##runs fastaselect using input cluster list and multifasta
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
3 fastafile=$1
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
4 clusterfile=$2
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
5 outputfile=$3
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
6
13656c2d7c73 Uploaded fastaselect as sh
john-mccallum
parents:
diff changeset
7 cat $clusterfile | fastaselect -c -f $fastafile > $outputfile