Mercurial > repos > john-mccallum > dnaclust

changeset 2:13656c2d7c73 draft

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Uploaded fastaselect as sh
author john-mccallum
date Wed, 26 Jun 2013 22:41:02 -0400
parents 8d31c21e4f28
children 17a8f8670dc9
files fastaselect.sh
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastaselect.sh	Wed Jun 26 22:41:02 2013 -0400
@@ -0,0 +1,7 @@
+#!/bin/env sh
+##runs fastaselect using  input cluster list and multifasta
+fastafile=$1
+clusterfile=$2
+outputfile=$3
+
+cat $clusterfile | fastaselect  -c  -f  $fastafile > $outputfile
\ No newline at end of file