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1 <?xml version="1.0"?>
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2 <tool id="fastaselect_1" name="fastaselectclust">
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3 <description>Get Fasta file of cluster centres from DNAclust output</description>
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4 <command>cat inputClusterFile | fastaselect -c -f $inputFastaFile > $outputfile </command>
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5 <inputs>
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6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/>
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7 <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
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8
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9
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10 </inputs>
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11 <outputs>
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12
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13 <data format="fasta" name="outputfile" />
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14 </outputs>
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15
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16 <help>
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17
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18 This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers.
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19
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20 It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/ for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output
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21
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22 </help>
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23 </tool>
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24
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