Mercurial > repos > john-mccallum > pcr_markers

annotate Galaxy-Workflow-CAPS_Marker_Development_from_454_Read_Mapping.ga @ 2:ea2117a7b363 draft

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Uploaded CAPS marker design workflow for 454 Data
author john-mccallum
date Sun, 09 Sep 2012 23:16:56 -0400
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ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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1 {
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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2 "a_galaxy_workflow": "true",
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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3 "annotation": "",
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4 "format-version": "0.1",
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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5 "name": "CAPS Marker Development from 454 Read Mapping",
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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6 "steps": {
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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7 "0": {
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8 "annotation": "",
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Reference sequences"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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19 "position": {
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25 "tool_state": "{\"name\": \"Reference sequences\"}",
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27 "type": "data_input",
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28 "user_outputs": []
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30 "1": {
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31 "annotation": "Reads to map",
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32 "id": 1,
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33 "input_connections": {},
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34 "inputs": [
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35 {
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36 "description": "Reads to map",
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37 "name": "SFF File "
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38 }
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39 ],
ea2117a7b363 Uploaded CAPS marker design workflow for 454 Data
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40 "name": "Input dataset",
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41 "outputs": [],
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42 "position": {
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44 "top": 313.95454406738281
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50 "type": "data_input",
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51 "user_outputs": []
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52 },
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53 "2": {
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54 "annotation": "barcode, vector or adapter sequences to trim",
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55 "id": 2,
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56 "input_connections": {},
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57 "inputs": [
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58 {
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59 "description": "barcode, vector or adapter sequences to trim",
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60 "name": "Trimming file"
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61 }
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63 "name": "Input dataset",
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64 "outputs": [],
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71 "tool_state": "{\"name\": \"Trimming file\"}",
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73 "type": "data_input",
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91 }
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93 "inputs": [],
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94 "name": "runMapping",
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95 "outputs": [
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96 {
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98 "type": "txt"
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100 {
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101 "name": "read_status",
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102 "type": "tabular"
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104 {
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106 "type": "fasta"
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108 {
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109 "name": "trimmed_reads_qual",
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110 "type": "qual454"
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116 {
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118 "type": "fasta"
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129 "name": "large_contigs_fasta",
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136 {
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137 "name": "pair_align",
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138 "type": "txt"
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140 {
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148 {
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154 "type": "tabular"
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156 {
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157 "name": "tag_pair_align",
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158 "type": "txt"
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168 {
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169 "name": "all_struct_vars",
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170 "type": "tabular"
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176 {
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