pcr_markers: test-data/freebayes

annotate test-data/freebayes_out.vcf @ 6:f201e8c6e004 draft default tip

Uploaded

author	ben-warren
date	Mon, 07 Jul 2014 19:28:17 -0400
parents	b321e0517be3
children

rev	line source
5 b321e0517be3 Uploaded ben-warren parents: diff changeset	1 ##fileformat=VCFv4.1
b321e0517be3 Uploaded ben-warren parents: diff changeset	2 ##fileDate=20140410
b321e0517be3 Uploaded ben-warren parents: diff changeset	3 ##source=freeBayes version 0.9.6
b321e0517be3 Uploaded ben-warren parents: diff changeset	4 ##reference=localref.fa
b321e0517be3 Uploaded ben-warren parents: diff changeset	5 ##phasing=none
b321e0517be3 Uploaded ben-warren parents: diff changeset	6 ##commandline="freebayes --bam localbam_0.bam --fasta-reference localref.fa --vcf /data/galaxy/galaxy-dist/database/files/000/dataset_31.dat"
b321e0517be3 Uploaded ben-warren parents: diff changeset	7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
b321e0517be3 Uploaded ben-warren parents: diff changeset	8 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
b321e0517be3 Uploaded ben-warren parents: diff changeset	9 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
b321e0517be3 Uploaded ben-warren parents: diff changeset	10 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
b321e0517be3 Uploaded ben-warren parents: diff changeset	11 ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
b321e0517be3 Uploaded ben-warren parents: diff changeset	12 ##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observations">
b321e0517be3 Uploaded ben-warren parents: diff changeset	13 ##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations">
b321e0517be3 Uploaded ben-warren parents: diff changeset	14 ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	15 ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	16 ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
b321e0517be3 Uploaded ben-warren parents: diff changeset	17 ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	18 ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
b321e0517be3 Uploaded ben-warren parents: diff changeset	19 ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	20 ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	21 ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	22 ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
b321e0517be3 Uploaded ben-warren parents: diff changeset	23 ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	24 ##INFO=<ID=XRM,Number=1,Type=Float,Description="Reference allele read mismatch rate: The rate of SNPs + MNPs + INDELs in reads supporting the reference allele.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	25 ##INFO=<ID=XRS,Number=1,Type=Float,Description="Reference allele read SNP rate: The rate of per-base mismatches (SNPs + MNPs) in reads supporting the reference allele.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	26 ##INFO=<ID=XRI,Number=1,Type=Float,Description="Reference allele read INDEL rate: The rate of INDELs (gaps) in reads supporting the reference allele.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	27 ##INFO=<ID=XAM,Number=A,Type=Float,Description="Alternate allele read mismatch rate: The rate of SNPs + MNPs + INDELs in reads supporting the alternate allele, excluding the called variant.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	28 ##INFO=<ID=XAS,Number=A,Type=Float,Description="Alternate allele read SNP rate: The rate of per-base mismatches (SNPs + MNPs) in reads supporting the alternate allele, excluding the called variant.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	29 ##INFO=<ID=XAI,Number=A,Type=Float,Description="Alternate allele read INDEL rate: The rate of INDELs (gaps) in reads supporting the alternate allele, excluding the called variant.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	30 ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	31 ##INFO=<ID=BVAR,Number=0,Type=Flag,Description="The best genotype combination in the posterior is variant (non homozygous).">
b321e0517be3 Uploaded ben-warren parents: diff changeset	32 ##INFO=<ID=CpG,Number=0,Type=Flag,Description="CpG site (either CpG, TpG or CpA)">
b321e0517be3 Uploaded ben-warren parents: diff changeset	33 ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	34 ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	35 ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	36 ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	37 ##INFO=<ID=HWE,Number=1,Type=Float,Description="Phred-scaled discrete HWE prior probability of the genotyping across all samples.">
b321e0517be3 Uploaded ben-warren parents: diff changeset	38 ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
b321e0517be3 Uploaded ben-warren parents: diff changeset	39 ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
b321e0517be3 Uploaded ben-warren parents: diff changeset	40 ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
b321e0517be3 Uploaded ben-warren parents: diff changeset	41 ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
b321e0517be3 Uploaded ben-warren parents: diff changeset	42 ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
b321e0517be3 Uploaded ben-warren parents: diff changeset	43 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
b321e0517be3 Uploaded ben-warren parents: diff changeset	44 ##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
b321e0517be3 Uploaded ben-warren parents: diff changeset	45 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
b321e0517be3 Uploaded ben-warren parents: diff changeset	46 ##FORMAT=<ID=GLE,Number=1,Type=String,Description="Genotype Likelihood Explicit, same as GL, but with tags to indicate the specific genotype. For instance, 0^-75.22\|1^-223.42\|0/0^-323.03\|1/0^-99.29\|1/1^-802.53 represents both haploid and diploid genotype likilehoods in a biallelic context">
b321e0517be3 Uploaded ben-warren parents: diff changeset	47 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
b321e0517be3 Uploaded ben-warren parents: diff changeset	48 ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
b321e0517be3 Uploaded ben-warren parents: diff changeset	49 ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
b321e0517be3 Uploaded ben-warren parents: diff changeset	50 ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
b321e0517be3 Uploaded ben-warren parents: diff changeset	51 ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
b321e0517be3 Uploaded ben-warren parents: diff changeset	52 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT unknown
b321e0517be3 Uploaded ben-warren parents: diff changeset	53 Chr1 106 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	54 Chr1 200 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	55 Chr1 217 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	56 Chr1 249 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	57 Chr1 586 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	58 Chr1 669 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	59 Chr1 682 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	60 Chr1 1007 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	61 Chr1 1012 . TGT AGA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0309278;XAS=0.0309278;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	62 Chr1 1056 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	63 Chr1 1067 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	64 Chr1 1257 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	65 Chr1 1305 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	66 Chr1 1319 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	67 Chr1 1330 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	68 Chr1 1441 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0421053;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	69 Chr1 1451 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0421053;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	70 Chr1 1460 . CTCTG ATCTC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0421053;XAS=0.0421053;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	71 Chr1 1480 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0421053;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	72 Chr1 1525 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0421053;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	73 Chr1 1670 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	74 Chr1 1673 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	75 Chr1 1700 . GC TG 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=2X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	76 Chr1 1711 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	77 Chr1 2117 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	78 Chr1 2154 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	79 Chr1 2485 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0103093;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	80 Chr1 2490 . AAA CAC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0103093;XAS=0.0103093;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	81 Chr1 2906 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	82 Chr1 2925 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	83 Chr1 3371 . CCCTT GCCTA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0105263;XAS=0.0105263;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	84 Chr1 3389 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0105263;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	85 Chr1 3431 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	86 Chr1 3464 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	87 Chr1 3746 . C CT 46.0861 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1M1I;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=ins;XAI=0;XAM=0.0204082;XAS=0.0204082;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:17.0704:1:0:0:1:46:-4.6,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	88 Chr1 3766 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0102041;XAM=0.0204082;XAS=0.0102041;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	89 Chr1 3790 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0102041;XAM=0.0204082;XAS=0.0102041;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	90 Chr1 3855 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	91 Chr1 5718 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	92 Chr1 5754 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	93 Chr1 5782 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	94 Chr1 5792 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	95 Chr1 6194 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	96 Chr1 6212 . G A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	97 Chr1 6265 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	98 Chr1 6482 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	99 Chr1 6515 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	100 Chr1 6520 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	101 Chr1 6534 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	102 Chr1 6602 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	103 Chr1 6853 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	104 Chr1 7015 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	105 Chr1 7406 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	106 Chr1 7422 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	107 Chr1 7452 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	108 Chr1 7460 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	109 Chr1 7476 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	110 Chr1 7843 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	111 Chr1 7906 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	112 Chr1 8214 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	113 Chr1 8262 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	114 Chr1 8279 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	115 Chr1 8285 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	116 Chr1 8288 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	117 Chr1 8298 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	118 Chr1 8305 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	119 Chr1 8329 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	120 Chr1 8509 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	121 Chr1 8547 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	122 Chr1 8633 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	123 Chr1 8657 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	124 Chr1 8894 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	125 Chr1 8958 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	126 Chr1 8968 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	127 Chr1 9070 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	128 Chr1 9100 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	129 Chr1 9488 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	130 Chr1 9514 . GTTT CTTG 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=4;MEANALT=1;MQM=42;MQMR=34;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=complex;XAI=0;XAM=0.0208333;XAS=0.0208333;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	131 Chr1 9532 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=34;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	132 Chr1 10064 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	133 Chr1 10072 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	134 Chr1 10082 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	135 Chr1 10099 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	136 Chr1 10499 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	137 Chr1 11126 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	138 Chr1 11134 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	139 Chr1 11141 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	140 Chr1 11159 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	141 Chr1 11169 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=6;MQMR=40;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	142 Chr1 11208 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=6;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	143 Chr1 11418 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	144 Chr1 11547 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	145 Chr1 11567 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	146 Chr1 11582 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	147 Chr1 13312 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	148 Chr1 13336 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	149 Chr1 13352 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	150 Chr1 13652 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	151 Chr1 13666 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	152 Chr1 13728 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	153 Chr1 14087 . ATGAAA GTGAGC 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X3M2X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=6;MEANALT=1;MQM=0;MQMR=18;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=1;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=complex;XAI=0.0365854;XAM=0.097561;XAS=0.0609756;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	154 Chr1 14103 . AGT GGC 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X1M1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=3;MEANALT=1;MQM=0;MQMR=18;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=1;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=complex;XAI=0.0365854;XAM=0.097561;XAS=0.0609756;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	155 Chr1 14119 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=18;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=1;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0487805;XAM=0.097561;XAS=0.0487805;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	156 Chr1 14126 . A G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=18;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=1;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0487805;XAM=0.097561;XAS=0.0487805;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	157 Chr1 14131 . GGAGTG TGGGTT 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X1M1X2M1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=6;MEANALT=1;MQM=0;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=1;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=complex;XAI=0.0365854;XAM=0.097561;XAS=0.0609756;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	158 Chr1 14141 . TCA CCC 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X1M1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=3;MEANALT=1;MQM=0;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=1;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=complex;XAI=0.0365854;XAM=0.097561;XAS=0.0609756;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	159 Chr1 14159 . G A 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=1;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0487805;XAM=0.097561;XAS=0.0487805;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	160 Chr1 14165 . T G 7.01833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=2;MQM=18;MQMR=0;NS=1;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0.0487805;XRM=0.109756;XRS=0.0609756;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:0.628068:3:1:17:1:17:-3.23,-2.00103,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	161 Chr1 14167 . A T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=1;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0487805;XAM=0.097561;XAS=0.0487805;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	162 Chr1 14182 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=1;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0487805;XAM=0.097561;XAS=0.0487805;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	163 Chr1 14201 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	164 Chr1 14210 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	165 Chr1 14230 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.133333;XAS=0.111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	166 Chr1 14240 . C T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.133333;XAS=0.111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	167 Chr1 14247 . G A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.133333;XAS=0.111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	168 Chr1 14256 . A G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.133333;XAS=0.111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	169 Chr1 14262 . TT CC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0.0222222;XAM=0.122222;XAS=0.1;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	170 Chr1 14292 . TCTG CCTA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X2M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=4;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0111111;XAM=0.133333;XAS=0.122222;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	171 Chr1 14306 . AC TT 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0.0222222;XAM=0.122222;XAS=0.1;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	172 Chr1 14312 . CG TA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0.0222222;XAM=0.122222;XAS=0.1;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	173 Chr1 14320 . TCTTT TCCCTA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1M1I1M1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0111111;XAM=0.133333;XAS=0.122222;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	174 Chr1 14327 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=1;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.133333;XAS=0.111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	175 Chr1 14595 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	176 Chr1 14624 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	177 Chr1 14629 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	178 Chr1 14724 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	179 Chr1 15170 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	180 Chr1 15183 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.0103093;XRM=0.0206186;XRS=0.0103093;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	181 Chr1 15199 . CAA AAT 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0103093;XAS=0.0103093;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	182 Chr1 15209 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0103093;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	183 Chr1 15599 . TGG GGC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0103093;XAS=0.0103093;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	184 Chr1 15624 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=40;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0103093;XAM=0.0103093;XAS=0;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	185 Chr1 15625 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0.0103093;XRM=0.0206186;XRS=0.0103093;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	186 Chr1 15670 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0.0103093;XRM=0.0206186;XRS=0.0103093;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	187 Chr1 15685 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	188 Chr1 15696 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	189 Chr1 15981 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	190 Chr1 16021 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	191 Chr1 16050 . CTGGG ATGGC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0315789;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	192 Chr1 16059 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	193 Chr1 16085 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	194 Chr1 16287 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	195 Chr1 16502 . GCA CCT 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0108696;XAM=0.0217391;XAS=0.0108696;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	196 Chr1 16512 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0217391;XAM=0.0217391;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	197 Chr1 16519 . TGTGT GGTGG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0108696;XAM=0.0217391;XAS=0.0108696;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	198 Chr1 17672 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	199 Chr1 17738 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	200 Chr1 17849 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	201 Chr1 17873 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	202 Chr1 17878 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	203 Chr1 18083 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	204 Chr1 18090 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	205 Chr1 18099 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	206 Chr1 18205 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	207 Chr1 18275 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	208 Chr1 18285 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	209 Chr1 18320 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	210 Chr1 18370 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	211 Chr1 18416 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	212 Chr1 20586 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	213 Chr1 20604 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	214 Chr1 20625 . G T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=13.5;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	215 Chr1 20692 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	216 Chr1 20702 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	217 Chr1 20720 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	218 Chr1 20891 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	219 Chr1 20922 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	220 Chr1 20967 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	221 Chr1 20998 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	222 Chr1 21007 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	223 Chr1 21042 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	224 Chr1 21055 . G A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=21;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	225 Chr1 21080 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=21;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	226 Chr1 21165 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0104167;XAM=0.0104167;XAS=0;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	227 Chr1 21189 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=25;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.0104167;XRM=0.0208333;XRS=0.0104167;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	228 Chr1 21202 . ACCT CCCA,TCCT 20.1741 . AB=0.5,0.5;ABP=3.0103,3.0103;AC=1,1;AF=0.5,0.5;AN=2;AO=1,1;CIGAR=1X2M1X,1X3M;DP=2;DPRA=0,0;EPP=5.18177,5.18177;EPPR=0;HWE=-0;LEN=4,1;MEANALT=2,2;MQM=25,42;MQMR=0;NS=1;NUMALT=2;ODDS=0.00237165;PAIRED=0,0;PAIREDR=0;RO=0;RPP=5.18177,5.18177;RPPR=0;RUN=1,1;SAP=5.18177,5.18177;SRP=0;TYPE=complex,snp;XAI=0,0;XAM=0.0104167,0.02;XAS=0.0104167,0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/2:1.71537:2:0:0:1,1:17,17:-3.23,-2.00103,-1.7,-2.00103,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	229 Chr1 21322 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	230 Chr1 21342 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	231 Chr1 21359 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	232 Chr1 21584 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	233 Chr1 21615 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	234 Chr1 21821 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	235 Chr1 21936 . TGT AGA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0103093;XAS=0.0103093;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	236 Chr1 21955 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0103093;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	237 Chr1 22337 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	238 Chr1 22345 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	239 Chr1 22415 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0104167;XAM=0.0104167;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	240 Chr1 22429 . ATTG CTTT 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X2M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=4;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0104167;XAS=0.0104167;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	241 Chr1 22520 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	242 Chr1 22539 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	243 Chr1 22742 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	244 Chr1 22801 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	245 Chr1 22888 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	246 Chr1 22919 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	247 Chr1 23346 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	248 Chr1 23360 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	249 Chr1 23390 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	250 Chr1 23432 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=11;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	251 Chr1 23687 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	252 Chr1 23716 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	253 Chr1 23745 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	254 Chr1 23812 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	255 Chr1 23829 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	256 Chr1 23959 . TC AG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0.0104167;XAM=0.0104167;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	257 Chr1 23989 . ATCT CTCA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X2M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=4;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0208333;XAS=0.0208333;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	258 Chr1 24095 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=26;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	259 Chr1 24350 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	260 Chr1 24377 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	261 Chr1 24395 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0.0104167;XRM=0.03125;XRS=0.0208333;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	262 Chr1 24413 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0.0104167;XRM=0.03125;XRS=0.0208333;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	263 Chr1 24416 . GAGT TAGA 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=4;MEANALT=1;MQM=0;MQMR=40;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=complex;XAI=0;XAM=0.0208333;XAS=0.0208333;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	264 Chr1 24467 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	265 Chr1 24477 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	266 Chr1 24846 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	267 Chr1 24889 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	268 Chr1 24923 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	269 Chr1 24964 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	270 Chr1 25174 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	271 Chr1 25301 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	272 Chr1 25320 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	273 Chr1 25345 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	274 Chr1 25355 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	275 Chr1 25550 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	276 Chr1 25580 . A T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=20;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.015625;XRS=0.0104167 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	277 Chr1 25584 . C G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=12.5;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	278 Chr1 25626 . GCAC TCAG 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=4;MEANALT=1;MQM=40;MQMR=33.5;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=complex;XAI=0;XAM=0.0208333;XAS=0.0208333;XRI=0.00526316;XRM=0.0205263;XRS=0.0152632 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	279 Chr1 25644 . A C 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=34.5;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0.00526316;XRM=0.0155263;XRS=0.0102632 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	280 Chr1 25687 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=27;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0.0105263;XAM=0.0105263;XAS=0;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	281 Chr1 25696 . ACTCA GCTCT,GCTCA 20.1741 . AB=0.5,0.5;ABP=3.0103,3.0103;AC=1,1;AF=0.5,0.5;AN=2;AO=1,1;CIGAR=1X3M1X,1X4M;DP=2;DPRA=0,0;EPP=5.18177,5.18177;EPPR=0;HWE=-0;LEN=5,1;MEANALT=2,2;MQM=42,27;MQMR=0;NS=1;NUMALT=2;ODDS=0.00237165;PAIRED=0,0;PAIREDR=0;RO=0;RPP=5.18177,5.18177;RPPR=0;RUN=1,1;SAP=5.18177,5.18177;SRP=0;TYPE=complex,snp;XAI=0,0;XAM=0.0105263,0.01;XAS=0.0105263,0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/2:1.71537:2:0:0:1,1:17,17:-3.23,-2.00103,-1.7,-2.00103,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	282 Chr1 25944 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	283 Chr1 25972 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	284 Chr1 25981 . G T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	285 Chr1 25983 . AA TT 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=2X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	286 Chr1 26001 . G C 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=9.52472;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	287 Chr1 26364 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	288 Chr1 26420 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	289 Chr1 27175 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	290 Chr1 27431 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	291 Chr1 27472 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	292 Chr1 27556 . A AT 46.0861 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1M1I;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=ins;XAI=0;XAM=0.0102041;XAS=0.0102041;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:17.0704:1:0:0:1:46:-4.6,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	293 Chr1 27610 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0102041;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	294 Chr1 27909 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	295 Chr1 28614 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	296 Chr1 28993 . TGGG GGGC 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=4;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=complex;XAI=0;XAM=0.0208333;XAS=0.0208333;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	297 Chr1 29022 . T A 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.015625;XRS=0.0104167 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	298 Chr1 29026 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	299 Chr1 29032 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0.0104167;XAM=0.0208333;XAS=0.0104167;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	300 Chr1 29080 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	301 Chr1 29218 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	302 Chr1 29342 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	303 Chr1 29463 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	304 Chr1 29516 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	305 Chr1 29528 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	306 Chr1 29575 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	307 Chr1 29580 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	308 Chr1 30681 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0210526;XAS=0.0105263;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	309 Chr1 30735 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0210526;XAS=0.0105263;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	310 Chr1 30766 . CTATT GTATA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0210526;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	311 Chr1 31019 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	312 Chr1 31054 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	313 Chr1 31101 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	314 Chr1 31400 . GT CG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	315 Chr1 31422 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	316 Chr1 32027 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	317 Chr1 32060 . C T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	318 Chr1 32166 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	319 Chr1 32226 . AA CC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	320 Chr1 32480 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	321 Chr1 32491 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	322 Chr1 32651 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	323 Chr1 32934 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	324 Chr1 33054 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	325 Chr1 33109 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	326 Chr1 33143 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	327 Chr1 33245 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	328 Chr1 33274 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	329 Chr1 33377 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	330 Chr1 33392 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	331 Chr1 33417 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	332 Chr1 33713 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	333 Chr1 33746 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	334 Chr1 35247 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	335 Chr1 35679 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	336 Chr1 36145 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	337 Chr1 36591 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	338 Chr1 37260 . AT CA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	339 Chr1 37270 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	340 Chr1 37283 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	341 Chr1 37284 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	342 Chr1 37295 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	343 Chr1 37321 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	344 Chr1 37610 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	345 Chr1 37673 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	346 Chr1 38268 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	347 Chr1 38656 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	348 Chr1 39013 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	349 Chr1 39023 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	350 Chr1 39460 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	351 Chr1 39480 . GA TC 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=2X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=mnp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	352 Chr1 39501 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	353 Chr1 39508 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	354 Chr1 41835 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	355 Chr1 41885 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	356 Chr1 42284 . AGTTT TGTTG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	357 Chr1 42628 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0222222;XAM=0.0222222;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	358 Chr1 42637 . ATTCC CTTCG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0111111;XAM=0.0222222;XAS=0.0111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	359 Chr1 42652 . TTTGT ATTGA 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0.0111111;XAM=0.0222222;XAS=0.0111111;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	360 Chr1 43145 . GG CC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	361 Chr1 43164 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	362 Chr1 43173 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	363 Chr1 43219 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.04;XAS=0.04;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	364 Chr1 43437 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	365 Chr1 44980 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	366 Chr1 45144 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	367 Chr1 45166 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	368 Chr1 45311 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	369 Chr1 45333 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	370 Chr1 45385 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	371 Chr1 45419 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	372 Chr1 45427 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	373 Chr1 45663 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	374 Chr1 45685 . AG CT 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=2X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	375 Chr1 46052 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	376 Chr1 46117 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	377 Chr1 46251 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	378 Chr1 46261 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	379 Chr1 47385 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	380 Chr1 47414 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	381 Chr1 48446 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	382 Chr1 48526 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	383 Chr1 48789 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	384 Chr1 48796 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=6;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	385 Chr1 48811 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=6;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	386 Chr1 48831 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	387 Chr1 48838 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=6;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	388 Chr1 48852 . A T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=3;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.025;XRS=0.025 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	389 Chr1 48907 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	390 Chr1 48936 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	391 Chr1 49044 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	392 Chr1 49059 . A C 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=18;MQMR=20;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.0310417;XRS=0.0258333 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	393 Chr1 49086 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0416667;XAS=0.03125;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	394 Chr1 49088 . C G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=18;MQMR=20;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.0310417;XRS=0.0258333 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	395 Chr1 49091 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0416667;XAS=0.03125;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	396 Chr1 49099 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0416667;XAS=0.03125;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	397 Chr1 49124 . AAAC TAAA 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=4;MEANALT=1;MQM=40;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=complex;XAI=0;XAM=0.0416667;XAS=0.0416667;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	398 Chr1 49134 . C A 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=9;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0.0104167;XAM=0.0416667;XAS=0.03125;XRI=0;XRM=0.015;XRS=0.015 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	399 Chr1 49493 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	400 Chr1 49543 . TGCAA GGCAT 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0315789;XAS=0.0315789;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	401 Chr1 49553 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	402 Chr1 49583 . G C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0315789;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	403 Chr1 50222 . ACAAAGA CCCACTC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X1M3X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=7;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	404 Chr1 50557 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	405 Chr1 50574 . G C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	406 Chr1 50603 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	407 Chr1 50790 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	408 Chr1 50828 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	409 Chr1 50843 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	410 Chr1 50958 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	411 Chr1 51330 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=35;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	412 Chr1 51606 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	413 Chr1 51681 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	414 Chr1 51984 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	415 Chr1 51996 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	416 Chr1 52061 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	417 Chr1 53145 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	418 Chr1 53423 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	419 Chr1 53442 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	420 Chr1 54071 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	421 Chr1 54472 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	422 Chr1 54525 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	423 Chr1 54562 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	424 Chr1 55358 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	425 Chr1 55372 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	426 Chr1 55415 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	427 Chr1 55460 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	428 Chr1 55491 . AA CC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=2X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=2;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=mnp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	429 Chr1 55917 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	430 Chr1 56372 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	431 Chr1 56383 . G T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=41;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	432 Chr1 56399 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	433 Chr1 56430 . A C 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	434 Chr1 56448 . C G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	435 Chr1 56477 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	436 Chr1 56586 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0204082;XAS=0.0102041;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	437 Chr1 56642 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0204082;XAS=0.0102041;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	438 Chr1 56672 . T TA 46.0861 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1M1I;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=ins;XAI=0;XAM=0.0204082;XAS=0.0204082;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:17.0704:1:0:0:1:46:-4.6,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	439 Chr1 56708 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	440 Chr1 56728 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	441 Chr1 56743 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	442 Chr1 56750 . G C 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=3.73412;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	443 Chr1 56756 . A T 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=3.73412;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	444 Chr1 56769 . A T 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=9.52472;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.0266667;XRS=0.0266667 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	445 Chr1 56792 . A T 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=9.52472;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	446 Chr1 56800 . A T 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=3.73412;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=9.52472;RUN=1;SAP=5.18177;SRP=3.73412;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	447 Chr1 56803 . C G 1.76687 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPRA=0;EPP=5.18177;EPPR=9.52472;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=28;NS=1;NUMALT=1;ODDS=0.690776;PAIRED=0;PAIREDR=0;RO=3;RPP=5.18177;RPPR=9.52472;RUN=1;SAP=5.18177;SRP=9.52472;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76309:4:3:51:1:17:-1.7,-0.60206,-4.76
b321e0517be3 Uploaded ben-warren parents: diff changeset	448 Chr1 56822 . A T 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=7.35324;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	449 Chr1 57075 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	450 Chr1 57129 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	451 Chr1 57130 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	452 Chr1 57164 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	453 Chr1 57166 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	454 Chr1 57533 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0210526;XAS=0.0105263;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	455 Chr1 57543 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0105263;XAM=0.0210526;XAS=0.0105263;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	456 Chr1 57561 . TTCGA ATCGC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0210526;XAS=0.0210526;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	457 Chr1 57885 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	458 Chr1 57929 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	459 Chr1 58372 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	460 Chr1 58383 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	461 Chr1 58391 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	462 Chr1 58399 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	463 Chr1 58807 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	464 Chr1 58825 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	465 Chr1 58844 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.02;XAS=0.02;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	466 Chr1 58862 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.03;XRS=0.03;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	467 Chr1 59508 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0306122;XAS=0.0204082;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	468 Chr1 59524 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0306122;XAS=0.0204082;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	469 Chr1 59546 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0102041;XAM=0.0306122;XAS=0.0204082;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	470 Chr1 59554 . C CG 46.0861 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1M1I;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=ins;XAI=0;XAM=0.0306122;XAS=0.0306122;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:17.0704:1:0:0:1:46:-4.6,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	471 Chr1 61378 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	472 Chr1 61387 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	473 Chr1 61599 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	474 Chr1 61652 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	475 Chr1 61882 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	476 Chr1 61904 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	477 Chr1 61913 . AGG TGC 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X1M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=3;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0.0309278;XAS=0.0309278;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	478 Chr1 61957 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0.0103093;XAM=0.0309278;XAS=0.0206186;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	479 Chr1 62010 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	480 Chr1 62056 . T A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	481 Chr1 62168 . CCGCC GCGCG 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X3M1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=5;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=complex;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	482 Chr1 62290 . T A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	483 Chr1 62446 . C G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.0152083;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	484 Chr1 62447 . CTAG ATAC 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X2M1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=4;MEANALT=1;MQM=42;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=3.0103;RUN=1;SAP=5.18177;SRP=7.35324;TYPE=complex;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0.02;XRS=0.02 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	485 Chr1 62462 . C G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=42;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.0152083;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	486 Chr1 62478 . C G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0.00520833;XRM=0.0152083;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	487 Chr1 62514 . G T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.02;XRS=0.02;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	488 Chr1 62598 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	489 Chr1 62634 . T G 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=42;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.04;XRS=0.04;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	490 Chr1 62658 . T G 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	491 Chr1 62665 . G C 2.50735 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPRA=0;EPP=5.18177;EPPR=3.0103;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=21;NS=1;NUMALT=1;ODDS=0.28531;PAIRED=0;PAIREDR=0;RO=2;RPP=5.18177;RPPR=7.35324;RUN=1;SAP=5.18177;SRP=3.0103;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0.01;XRS=0.01 GT:GQ:DP:RO:QR:AO:QA:GL 0/1:2.38104:3:2:34:1:17:-1.7,-0.425969,-3.23
b321e0517be3 Uploaded ben-warren parents: diff changeset	492 Chr1 62686 . A T 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	493 Chr1 62697 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.03;XAS=0.03;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7
b321e0517be3 Uploaded ben-warren parents: diff changeset	494 Chr1 62758 . G T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	495 Chr1 62769 . A C 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=0;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	496 Chr1 62841 . T G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	497 Chr1 62852 . C G 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	498 Chr1 62929 . C A 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=18;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0;XAS=0;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	499 Chr1 63049 . A T 17.1701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=1;CIGAR=1X;DP=1;DPRA=0;EPP=5.18177;EPPR=0;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=3.91202;PAIRED=0;PAIREDR=0;RO=0;RPP=5.18177;RPPR=0;RUN=1;SAP=5.18177;SRP=0;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0;XRS=0;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 1/1:14.1547:1:0:0:1:17:-1.7,-0.30103,0
b321e0517be3 Uploaded ben-warren parents: diff changeset	500 Chr1 63120 . C A 4.77465 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPRA=0;EPP=5.18177;EPPR=5.18177;HWE=-0;LEN=1;MEANALT=1;MQM=42;MQMR=18;NS=1;NUMALT=1;ODDS=0.00237165;PAIRED=0;PAIREDR=0;RO=1;RPP=5.18177;RPPR=5.18177;RUN=1;SAP=5.18177;SRP=5.18177;TYPE=snp;XAI=0;XAM=0.01;XAS=0.01;XRI=0;XRM=0.01;XRS=0.01;BVAR GT:GQ:DP:RO:QR:AO:QA:GL 0/1:1.76435:2:1:17:1:17:-1.7,-0.30103,-1.7

Mercurial > repos > john-mccallum > pcr_markers

annotate test-data/freebayes_out.vcf @ 6:f201e8c6e004 draft default tip