Mercurial > repos > jose_duarte > phagedpo

changeset 43:ff949d77ed98 draft

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Uploaded
author jose_duarte
date Thu, 21 Nov 2024 14:45:46 +0000
parents e3d2637686a0
children d7d06076817a
files PhageDPO.xml
diffstat 1 files changed, 28 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/PhageDPO.xml	Thu Nov 21 14:43:41 2024 +0000
+++ b/PhageDPO.xml	Thu Nov 21 14:45:46 2024 +0000
@@ -1,5 +1,31 @@
-<help><![CDATA[
-
+<tool id="PhageDPO" name="PhageDPO" version="0.1.0" python_template_version="3.5">
+	<description>
+Phage Depolymerase Finder
+	</description>
+    <requirements>
+        <requirement type="package" version="1.78">biopython</requirement>
+        <requirement type="package" version="0.24.1">scikit-learn</requirement>
+        <requirement type="package" version="1.19.2">numpy</requirement>
+        <requirement type="package" version="1.2.3">pandas</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/DPOGALAXY.py' '${input1}'
+    ]]></command>
+    <inputs>
+		<param type="data" name="input1" format="fasta" label="Fasta file"/>
+    </inputs>
+    <outputs>
+		<data name="output1" format="html" from_work_dir="output.html" 
+		label="DPO Prediction"/>
+    </outputs>
+	<tests>
+        <test>
+	        <param name="input1" value="fasta_file.fasta"/>
+            <output name="output1" file="output.html"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+	
 ========
 PhageDPO
 ========