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Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author josemuino
date Tue, 07 Jun 2011 17:25:24 -0400
parents
children
files PRICAT/PRICAT.xml PRICAT/ReadMe.txt
diffstat 2 files changed, 41 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PRICAT/PRICAT.xml	Tue Jun 07 17:25:24 2011 -0400
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<!--
+    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
+    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
+    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
+-->
+<tool name="Get Data from PRICAT" id="PRICAT_test" tool_type="data_source" version="1.0">
+    <description>server</description>
+    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
+    <inputs action="http://www.ab.wur.nl/pricat/4galaxy/pricat4galaxy.html" check_values="false" method="post" target="_top"> 
+        <display>go to PRICAT server $GALAXY_URL</display>
+        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=pricat" />
+    </inputs>
+    <request_param_translation>
+        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
+        <request_param galaxy_name="URL" remote_name="URL" missing="" />
+	<request_param galaxy_name="name" remote_name="name" missing="DNA binding events" />
+        <request_param galaxy_name="dbkey" remote_name="db" missing="TAIR9" />
+        <request_param galaxy_name="data_type" remote_name="data_type" missing="csv" />
+    </request_param_translation>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="interval" />
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PRICAT/ReadMe.txt	Tue Jun 07 17:25:24 2011 -0400
@@ -0,0 +1,15 @@
+To install the tool "Get Data from PRICAT" into GALAXY, and to be able to import directly PRICAT datasets to GALAXY; please:
+1) copy the PRICAT.xml file in the folder galaxy_dist/tools/data_source of your GALAXY instance
+2) modify the GALAXY file: "tool_conf.xml" at galaxy_dist/ folder to include the location of "PRICAT.xml"
+	eg: 
+		 <label text="PRI-CAT tools" id="PRI-CAT" />
+		 <section name="PRI-CAT" id="PRICAT">
+		 <tool file="data_source/PRICAT.xml" />
+ 		</section>
+3) Restart GALAXY
+
+
+For more information about GALAXY look at http://galaxy.psu.edu/
+
+Enjoy,
+