Mercurial > repos > josemuino > pricat_test
changeset 0:4afc1a0d1f11 default tip
Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author | josemuino |
---|---|
date | Tue, 07 Jun 2011 17:25:24 -0400 |
parents | |
children | |
files | PRICAT/PRICAT.xml PRICAT/ReadMe.txt |
diffstat | 2 files changed, 41 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PRICAT/PRICAT.xml Tue Jun 07 17:25:24 2011 -0400 @@ -0,0 +1,26 @@ +<?xml version="1.0"?> +<!-- + If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in + the initial response. If value of 'URL_method' is 'post', any additional params coming back in the + initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. +--> +<tool name="Get Data from PRICAT" id="PRICAT_test" tool_type="data_source" version="1.0"> + <description>server</description> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <inputs action="http://www.ab.wur.nl/pricat/4galaxy/pricat4galaxy.html" check_values="false" method="post" target="_top"> + <display>go to PRICAT server $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=pricat" /> + </inputs> + <request_param_translation> + <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> + <request_param galaxy_name="URL" remote_name="URL" missing="" /> + <request_param galaxy_name="name" remote_name="name" missing="DNA binding events" /> + <request_param galaxy_name="dbkey" remote_name="db" missing="TAIR9" /> + <request_param galaxy_name="data_type" remote_name="data_type" missing="csv" /> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="interval" /> + </outputs> + <options sanitize="False" refresh="True"/> +</tool> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PRICAT/ReadMe.txt Tue Jun 07 17:25:24 2011 -0400 @@ -0,0 +1,15 @@ +To install the tool "Get Data from PRICAT" into GALAXY, and to be able to import directly PRICAT datasets to GALAXY; please: +1) copy the PRICAT.xml file in the folder galaxy_dist/tools/data_source of your GALAXY instance +2) modify the GALAXY file: "tool_conf.xml" at galaxy_dist/ folder to include the location of "PRICAT.xml" + eg: + <label text="PRI-CAT tools" id="PRI-CAT" /> + <section name="PRI-CAT" id="PRICAT"> + <tool file="data_source/PRICAT.xml" /> + </section> +3) Restart GALAXY + + +For more information about GALAXY look at http://galaxy.psu.edu/ + +Enjoy, +