Mercurial > repos > jowong > add_sample_as_first_line

comparison add_sample_name_as_first_line.py @ 3:98f9da980bf5 draft default tip

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planemo upload for repository https://github.com/jowong4/add_sample_name_as_first_line_of_file commit f3fe76f6cbf17b0ec4162065206483652a6519b7-dirty
author jowong
date Fri, 09 Nov 2018 12:27:57 -0500
parents 74a9f37e2bc9
children
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2:74a9f37e2bc9 3:98f9da980bf5
15 #output=open(args.output, 'w') 15 #output=open(args.output, 'w')
16 16
17 #print >> output, args.label 17 #print >> output, args.label
18 #print >> output, input 18 #print >> output, input
19 19
20 sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.label.rstrip().lstrip()) 20 sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.sample.rstrip().lstrip())
21 21
22 with open(args.input) as input: 22 with open(args.input) as input:
23 with open(args.output, 'w') as output: 23 with open(args.output, 'w') as output:
24 output.write(sample_name+"\n") 24 output.write(sample_name+"\n")
25 for line in input: 25 for line in input: