Mercurial > repos > jowong > prince_galaxy

comparison filler.py @ 8:63f3743c2ae4 draft

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planemo upload
author jowong
date Tue, 13 Nov 2018 12:19:53 -0500
parents 82569b47df8d
children
comparison
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7:0032da940600 8:63f3743c2ae4
5 5
6 parser = ap.ArgumentParser(prog='filler', conflict_handler='resolve', 6 parser = ap.ArgumentParser(prog='filler', conflict_handler='resolve',
7 description="produce filler collection to deal with galaxy handling") 7 description="produce filler collection to deal with galaxy handling")
8 8
9 input = parser.add_argument_group('Input', '') 9 input = parser.add_argument_group('Input', '')
10 input.add_argument('-i', '--input', nargs=1, required=True, help="Paths to forward reads") 10 input.add_argument('-i', '--input', nargs=1, required=True, help="Paths to (forward) reads")
11 input.add_argument('-o', '--output', nargs=1, required=True, help="output") 11 input.add_argument('-o', '--output', nargs=1, required=True, help="output")
12 12
13 if len(sys.argv) == 0: 13 if len(sys.argv) == 0:
14 parser.print_usage() 14 parser.print_usage()
15 sys.exit(1) 15 sys.exit(1)