Mercurial > repos > jowong > prince_galaxy
changeset 1:69a2c1612c5f draft
planemo upload
author | jowong |
---|---|
date | Fri, 26 Oct 2018 09:25:59 -0400 |
parents | b98b3e9da146 |
children | e8454628baa2 |
files | prince.xml |
diffstat | 1 files changed, 9 insertions(+), 4 deletions(-) [+] |
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--- a/prince.xml Mon Oct 22 11:10:25 2018 -0400 +++ b/prince.xml Fri Oct 26 09:25:59 2018 -0400 @@ -18,14 +18,19 @@ </test> </tests> <help><![CDATA[ - usage: prince [-h] [-bo BOOST_OUTPUT] [-to TARGET_OUTPUT] [-tmp TEMPLATES] - [-tf TARGET_FILE] [-bf BOOSTING_FILE] [-k K] [-cn COPYNUMBER] + usage: prince [-h] [-bo BOOST_OUTPUT] [-to TARGET_OUTPUT] [-tmp TEMPLATES] [-tf TARGET_FILE] [-bf BOOSTING_FILE] [-k K] [-cn COPYNUMBER] Prince Options. optional arguments: - -h, --help show this help message and exit - -bo time + -h, --help Show this help message and exit + -bo, --boost_output Output file for training data / training data used to predict copy numbers for queries + -to, --target_output Output file for query copy number predictions + -tmp, --templates VNTR templates. Default is for M.TB + -tf, --target_file Target genome names in a text file + -bf, --boosting_file Training genome file names in a text file + -k, --k Kmer size used during read recruitment + -cn, --copynumber Copy number used for training genome ]]></help> <citations>