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1 language: python
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2 python:
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3 # We don't actually use the Travis Python, but this keeps it organized.
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4 - "3.6"
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5 install:
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6 - sudo apt-get update
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7 # We do this conditionally because it saves us some downloading if the
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8 # version is the same.
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9 - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
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10 wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
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11 else
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12 wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
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13 fi
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14 - bash miniconda.sh -b -p $HOME/miniconda
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15 - export PATH="$HOME/miniconda/bin:$PATH"
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16 - hash -r
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17 - conda config --set always_yes yes --set changeps1 no
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18 - conda update -q conda
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19 # Useful for debugging any issues with conda
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20 - conda info -a
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21 - conda config --add channels bioconda
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22 - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION samtools bowtie2 mash bcftools biopython nose blast pandas seqtk
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23 - source activate test-environment
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24 - python setup.py install
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25
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26 script:
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27 - nosetests |
