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changeset 29:5442b9d2e5d1 draft

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Uploaded
author jpetteng
date Tue, 09 Jan 2018 11:02:23 -0500
parents 41301e1f075a
children 982d4c52c7c5
files ecoli_serotyping/ectyper.xml
diffstat 1 files changed, 9 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/ecoli_serotyping/ectyper.xml	Tue Jan 09 10:38:16 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Tue Jan 09 11:02:23 2018 -0500
@@ -2,6 +2,15 @@
     <requirements>
       <requirement type="package" version="3.6.3">python</requirement>
       <requirement type="package">ectyper</requirement>
+      <requirement type="package">biopython</requirement>
+      <requirement type="package">blast</requirement>
+      <requirement type="package">samtools</requirement>
+      <requirement type="package">bcftools</requirement>
+      <requirement type="package">bowtie</requirement>
+      <requirement type="package">spades</requirement>
+      <requirement type="package">seqtk</requirement>
+      <requirement type="package">pandas</requirement>
+      <requirement type="package">mash</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
       #if $jobtype.select == "asm"