name: hitsandclusters
owner: jashay90
description: Count hits per gene and cluster
long_description: Takes a bam alignment file and a tab-delimited file defining the cluster identity of each reference sequence as input. Produces two output files -- a file with counts and proportion covered for each reference sequence, and a file with the maximum count and proportion covered within each cluster.
remote_repository_url: https://github.com/jashay90/galaxytools/tree/master/countandcluster
type: unrestricted
categories:
  - Metagenomics
  - Sequence Analysis