Mercurial > repos > jvolkening > b2b_sync_reads

annotate test-data/summarize.strip.txt @ 0:c97a821e54f3 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
author jvolkening
date Sat, 02 Mar 2024 07:44:26 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
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diff changeset
1 ----------------------------------------
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
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2 Summary
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
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3 ----------------------------------------
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
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4 number of scaffolds: 10
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
5 total length: 27689
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
6 average length: 2769
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
7 G/C content: 50%
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
8 ambiguous content: 12%
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
9 longest scaffold: 5980
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
10 N50: 4945
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
11 N90: 1997
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
12 N95: 1197
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
diff changeset
13 shortest scaffold: 209
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
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14 NOTE: Ns were stripped for above calculations
c97a821e54f3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 54eef6140a5086e3373b2406efb2e18dbfae1336-dirty
jvolkening
parents:
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15 ----------------------------------------