Mercurial > repos > kellrott > synapse_interface

changeset 6:131300efb435

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Fixing to change in WebAPI
author kellrott
date Wed, 11 Dec 2013 17:57:08 -0500
parents f798da48a30d
children 353be5809eeb
files synapse_interface/._synapse_create.xml synapse_interface/._synapse_download.xml synapse_interface/._synapse_query.xml synapse_interface/synapse_create.xml synapse_interface/synapse_download.xml synapse_interface/synapse_query.xml synapse_interface/tool_dependencies.xml
diffstat 7 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
Binary file synapse_interface/._synapse_create.xml has changed
Binary file synapse_interface/._synapse_download.xml has changed
Binary file synapse_interface/._synapse_query.xml has changed
--- a/synapse_interface/synapse_create.xml	Mon Jul 22 17:43:48 2013 -0400
+++ b/synapse_interface/synapse_create.xml	Wed Dec 11 17:57:08 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="synapse_upload" name="Synapse Upload" version="3.0.0">
+<tool id="synapse_upload" name="Synapse Upload" version="3.0.1">
 	<description>Create Synapse</description>
 	<requirements>
-		<requirement type="package" version="0.3.0">synapseclient</requirement>
+		<requirement type="package" version="0.5.1">synapseclient</requirement>
 	</requirements>
 	<command interpreter="python">synapse_galaxy_client.py upload $script_file 
 $etype 
@@ -120,7 +120,7 @@
 
 .. |location_link| raw:: html
 
-   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_upload&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
+   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_upload&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
 
 	</help>
 
--- a/synapse_interface/synapse_download.xml	Mon Jul 22 17:43:48 2013 -0400
+++ b/synapse_interface/synapse_download.xml	Wed Dec 11 17:57:08 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="synapse_download" name="Synapse Download" version="3.0.0">
+<tool id="synapse_download" name="Synapse Download" version="3.0.1">
 	<description>Download Synapse Entity</description>
 	<requirements>
-		<requirement type="package" version="0.3.0">synapseclient</requirement>
+		<requirement type="package" version="0.5.1">synapseclient</requirement>
 	</requirements>
 	<command interpreter="python">synapse_galaxy_client.py get $script_file $synid $outfile</command>
 	<request_param_translation>
@@ -42,7 +42,7 @@
 
 .. |location_link| raw:: html
 
-   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_download&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
+   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_download&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
 
 	</help>
 </tool>
--- a/synapse_interface/synapse_query.xml	Mon Jul 22 17:43:48 2013 -0400
+++ b/synapse_interface/synapse_query.xml	Wed Dec 11 17:57:08 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="synapse_query" name="Synapse Query" version="3.0.0">
+<tool id="synapse_query" name="Synapse Query" version="3.0.1">
 	<description>Query Synapse</description>
 	<requirements>
-		<requirement type="package" version="0.3.0">synapseclient</requirement>
+		<requirement type="package" version="0.5.1">synapseclient</requirement>
 	</requirements>
 	<command interpreter="python">synapse_galaxy_client.py query $script_file $query_file $outfile</command>
 	<request_param_translation>
@@ -48,7 +48,7 @@
 
 .. |location_link| raw:: html
 
-   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_query&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
+   &lt;a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&amp;RETURN_TO_URL=${host_url}?tool_id=synapse_query&amp;" target="_blank"&gt;at Synapse&lt;/a&gt;
 
 Example Query:
 
--- a/synapse_interface/tool_dependencies.xml	Mon Jul 22 17:43:48 2013 -0400
+++ b/synapse_interface/tool_dependencies.xml	Wed Dec 11 17:57:08 2013 -0500
@@ -1,13 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="synapseclient" version="0.3.0">
+    <package name="synapseclient" version="0.5.1">
         <install version="1.0">
             <actions>
-                <action type="setup_virtualenv">synapseclient == 0.3.0</action>
+                <action type="setup_virtualenv">synapseclient == 0.5.1</action>
             </actions>
         </install>
         <readme>
 A client for Synapse, a collaborative compute space that allows scientists to share and analyze data together. Synapse brings together scientific data, tools, and disease models into a commons that enables true collaborative research. The platform consists of a web portal, web services, and integration with data analysis tools such as R, python, Galaxy and Java.
         </readme>
     </package>
-</tool_dependency>
\ No newline at end of file
+</tool_dependency>