--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/swift-hello	Tue Oct 15 16:22:01 2013 -0400
@@ -0,0 +1,224 @@
+#!/bin/bash
+
+site=$1
+n=$2
+outdir=$3
+logfile=$4
+htmlfile=$5
+mkdir -p $outdir
+echo $@ >> /tmp/args.txt
+
+swift=`\which swift`
+
+# use "here" document for configs
+cat << EOF > /tmp/hello.swift
+type file;
+
+app (file o) helloapp (string msg) {
+  echo msg stdout=@o;
+}
+
+file out[]<simple_mapper; location="$outdir", prefix="f.",suffix=".txt">;
+
+foreach j in [1:@toInt(@arg("n","2"))] {
+ out[j] = helloapp ("Hello World!");
+}
+EOF
+
+case "$site" in
+cluster )
+cat << 'EOF' > /tmp/sites.xml
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.ci.uchicago.edu/swift/SwiftSites">
+  <pool handle="cluster">
+    <execution provider="coaster" jobmanager="local:pbs"/>
+    <profile namespace="globus" key="queue">default</profile>
+    <profile namespace="globus" key="jobsPerNode">8</profile>
+    <profile namespace="globus" key="maxWalltime">02:00:00</profile>
+    <profile namespace="globus" key="maxTime">7500</profile>
+    <profile namespace="globus" key="highOverAllocation">100</profile>
+    <profile namespace="globus" key="lowOverAllocation">100</profile>
+    <profile namespace="globus" key="slots">1</profile>
+    <profile namespace="globus" key="maxNodes">1</profile>
+    <profile namespace="globus" key="nodeGranularity">1</profile>
+    <profile namespace="karajan" key="jobThrottle">.31</profile>
+    <profile namespace="karajan" key="initialScore">10000</profile>
+    <workdirectory>/tmp/swift.workdir</workdirectory>
+  </pool>
+</config>
+EOF
+
+cat << 'EOF' > /tmp/tc
+cluster echo  echo
+cluster cat   cat
+EOF
+
+cat << 'EOF' > /tmp/cf
+use.provider.staging=true
+wrapperlog.always.transfer=true
+execution.retries=1
+provider.staging.pin.swiftfiles=false
+sitedir.keep=true
+lazy.errors=false
+EOF
+;;
+
+localhost )
+cat << 'EOF' > /tmp/sites.xml
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.ci.uchicago.edu/swift/SwiftSites">
+   <pool handle="localhost">
+      <execution provider="local" />
+      <profile namespace="karajan" key="jobThrottle">0.01</profile>
+      <profile namespace="karajan" key="initialScore">10000</profile>
+      <filesystem provider="local"/>
+      <workdirectory>/tmp/swift.work</workdirectory>
+      <profile namespace="swift" key="stagingMethod">local</profile>
+   </pool>
+</config>
+EOF
+
+cat << 'EOF' > /tmp/tc
+localhost echo echo
+localhost cat cat
+EOF
+
+cat << 'EOF' > /tmp/cf
+use.provider.staging=false
+wrapperlog.always.transfer=true
+execution.retries=0
+provider.staging.pin.swiftfiles=false
+sitedir.keep=true
+lazy.errors=false
+EOF
+;;
+
+* )
+echo "defaulting to localhost"
+
+cat << 'EOF' > /tmp/sites.xml
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.ci.uchicago.edu/swift/SwiftSites">
+   <pool handle="localhost">
+      <execution provider="local" />
+      <profile namespace="karajan" key="jobThrottle">0.01</profile>
+      <profile namespace="karajan" key="initialScore">10000</profile>
+      <filesystem provider="local"/>
+      <workdirectory>/tmp/swift.work</workdirectory>
+      <profile namespace="swift" key="stagingMethod">local</profile>
+   </pool>
+</config>
+EOF
+
+cat << 'EOF' > /tmp/tc
+localhost echo echo
+localhost cat cat
+EOF
+
+cat << 'EOF' > /tmp/cf
+use.provider.staging=false
+wrapperlog.always.transfer=true
+execution.retries=0
+provider.staging.pin.swiftfiles=false
+sitedir.keep=true
+lazy.errors=false
+EOF
+;;
+esac
+
+$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/hello.swift -n=$n -data=$data 2> std.err
+EXITCODE=$?
+
+swiftlog=`\ls -t *.log | head -1`
+
+cat << 'EOF' > /tmp/plotswiftlogs
+#!/bin/bash
+
+#usage: ./extract4plots <swift.logfile>
+
+SWIFTLOGFILE=$1
+#TMPDIR=`mktemp -d plotlog.XXX`
+grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out
+SWIFTOUTFILE=swiftoutfile.out
+#extract start time
+TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '`
+START_TIME=`date +%s -d "$TMPDATE"`
+
+#extract end time
+TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '`
+END_TIME=`date +%s -d "$TMPDATE"`
+
+#duration
+DIFFTIME=$((END_TIME - START_TIME))
+#echo 0 > active.txt
+#echo 0 > cumulative.txt
+#extract active runs in a file
+(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > active.txt)
+
+#extract successful completions in a file
+(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt)
+
+#prepare tics
+activelines=`wc -l active.txt | awk '{print $1}'`
+cumulines=`wc -l cumulative.txt | awk '{print $1}'`
+
+if [ $activelines -ne 0 ]
+then
+  activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc`
+fi
+seq 0 $activelinespertic $DIFFTIME > activetics.txt
+
+if [ $cumulines -ne 0 ]
+then
+    cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc`
+fi
+
+seq 0 $cumulinespertic $DIFFTIME > cumultics.txt
+
+#final plot data
+paste activetics.txt active.txt > plot_active.txt
+paste cumultics.txt cumulative.txt > plot_cumulative.txt
+
+cat << EOF1 > plotit.gp
+set terminal png enhanced
+set output "activeplot.png"
+set nokey
+set xlabel "Time in sec"
+set ylabel "number of active jobs"
+set title "Active jobs"
+plot "plot_active.txt" using 1:2 with line
+
+set output "cumulativeplot.png"
+set ylabel "number of completed jobs"
+set title "Cumulative jobs"
+plot "plot_cumulative.txt" using 1:2 with lines
+EOF1
+
+gnuplot plotit.gp 2>/dev/null
+
+#cp *.png ../
+echo `pwd`>/tmp/curdir
+echo `ls`>/tmp/dirlist
+#cd ..
+EOF
+
+cat << EOF > $htmlfile
+<!DOCTYPE HTML>
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+  <title>Hello output</title>
+</head>
+<body>
+<h2>Browse output of hello application</h2>
+`for i in \`find $outdir -type f\`; do echo "<a href=\`basename $i\`>Output: \`basename $i\`</a><br/>"; done`
+</body>
+</html>
+EOF
+
+if [ "$EXITCODE" -ne "0" ]; then
+       cat std.err >&2
+fi
+cp std.err $logfile
+rm std.err
+exit $EXITCODE