annotate tool_dependencies.xml @ 18:6f1302d12a38 draft

Uploaded
author kevyin
date Wed, 19 Dec 2012 20:09:58 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
1 <?xml version="1.0"?>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
2 <tool_dependency>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
3 <package name="homer" version="4.1">
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
4 <install version="4.1">
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
5 <actions>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
6 <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
7 <!--<action type="shell_command">perl ./configureHomer.pl -install</action>-->
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
8 <!--<action type="shell_command">perl ./configureHomer.pl -install hg19</action>-->
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
9 <action type="move_directory_files">
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
10 <source_directory>./</source_directory>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
11 <destination_directory>$INSTALL_DIR</destination_directory>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
12 </action>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
13 <action type="set_environment">
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
15 </action>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
16 </actions>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
17 </install>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
18 <readme>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
19 Installs homer
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
20 </readme>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
21 </package>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
22 </tool_dependency>
6f1302d12a38 Uploaded
kevyin
parents:
diff changeset
23