--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Thu Nov 22 20:27:29 2012 -0500
@@ -0,0 +1,40 @@
+Meme-chip wrapper for Galaxy
+
+=========================================:
+========Installation instructions========:
+=========================================:
+The tool_dependencies.xml can attempt to install meme in a folder specific for this tool.
+(such as bwa_wrappers)
+
+The procedure does NOT download motif databases you will need to download them yourself
+
+Meme-chip assumes the meme tools are in PATH.
+Make sure meme is accessible
+
+
+========Tool data table conf========
+Check the meme_chip_motifs entry is in tool_data_table_conf.xml
+
+========Tool loc file========
+
+Example in tool-data/meme_chip_motifs.loc.sample
+Entries come from the motif_db.csv in the motif database folder
+
+make sure:
+- 3 cols
+- tab delimited
+- paths are correct
+
+There is a script to convert the csv to the loc format here:
+https://bitbucket.org/gvl/meme-chip/src
+After running delete the loc entries with multiple paths eg. All Vertebrates
+
+
+=========================================:
+LICENSE for this wrapper: 
+=========================================:
+Kevin Ying
+Garvan Institute: http://www.garvan.org.au
+GVL: https://genome.edu.au/wiki/GVL
+
+http://opensource.org/licenses/mit-license.php