Mercurial > repos > kevyin > meme_chip
view README @ 18:2948554ae3d7 draft default tip
added nmeme option
author | kevyin |
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date | Thu, 22 Nov 2012 20:27:29 -0500 |
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Meme-chip wrapper for Galaxy =========================================: ========Installation instructions========: =========================================: The tool_dependencies.xml can attempt to install meme in a folder specific for this tool. (such as bwa_wrappers) The procedure does NOT download motif databases you will need to download them yourself Meme-chip assumes the meme tools are in PATH. Make sure meme is accessible ========Tool data table conf======== Check the meme_chip_motifs entry is in tool_data_table_conf.xml ========Tool loc file======== Example in tool-data/meme_chip_motifs.loc.sample Entries come from the motif_db.csv in the motif database folder make sure: - 3 cols - tab delimited - paths are correct There is a script to convert the csv to the loc format here: https://bitbucket.org/gvl/meme-chip/src After running delete the loc entries with multiple paths eg. All Vertebrates =========================================: LICENSE for this wrapper: =========================================: Kevin Ying Garvan Institute: http://www.garvan.org.au GVL: https://genome.edu.au/wiki/GVL http://opensource.org/licenses/mit-license.php