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comparison gbsx_barcodeGenerator.sh @ 15:59c5f45c9ebf draft

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author koen
date Wed, 13 Jan 2016 11:28:16 -0500
parents e9be4649dd28
children 331f373e5c22
comparison
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14:4aaff8f562c1 15:59c5f45c9ebf
6 barcode=$1 6 barcode=$1
7 enzyme=$2 7 enzyme=$2
8 barcode_list=$3 8 barcode_list=$3
9 barcode_summary=$4 9 barcode_summary=$4
10 10
11 java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme 11 java -jar $GBSX_ROOT_DIR/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
12 12
13 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list 13 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
14 cat barcode_summary.txt > $barcode_summary 14 cat barcode_summary.txt > $barcode_summary