Mercurial > repos > koen > gbsx

diff gbsx_barcodeGenerator.sh @ 15:59c5f45c9ebf draft

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author koen
date Wed, 13 Jan 2016 11:28:16 -0500
parents e9be4649dd28
children 331f373e5c22
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line diff
--- a/gbsx_barcodeGenerator.sh	Wed Jan 13 11:26:26 2016 -0500
+++ b/gbsx_barcodeGenerator.sh	Wed Jan 13 11:28:16 2016 -0500
@@ -8,7 +8,7 @@
 barcode_list=$3
 barcode_summary=$4
 
-java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
+java -jar $GBSX_ROOT_DIR/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
 
 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
 cat barcode_summary.txt > $barcode_summary