Mercurial > repos > koen > gbsx
diff test-data/chr21.l150.apeki.txt @ 22:062399f3787f draft
new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
author | koen |
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date | Tue, 26 Jan 2016 07:38:36 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chr21.l150.apeki.txt Tue Jan 26 07:38:36 2016 -0500 @@ -0,0 +1,36 @@ +input parameters: + enzyme name used: ApeKI + enzyme cut sequence: G^CWGC + for bedfile, genome name used: genome + read length provided: 150 +minimum fragment size: 100 +maximum fragment size: 1000 + +reference sequence(s) analyzed: + chr21.fa + +total cuts for enzyme (ApeKI): 62623 + +looked at 62624 fragments in total +35553 fragments <= 1000 nt and >= 100 nt + fragments in range per reference sequence: + chr21 had 35553 fragments + distances between fragments in range: + <=1kb 28216 fragment pairs + 1kb-10kb 7209 fragment pairs + 10kb-100kb 125 fragment pairs + 100kb-1Mb 1 fragment pairs + 1Mb-10Mb 1 fragment pairs + >10Mb 0 fragment pairs + fragments less than 100 nt: 16329 + + fragments 100-199 nt: 9755 + fragments 200-299 nt: 6571 + fragments 300-399 nt: 4853 + fragments 400-499 nt: 3701 + fragments 500-599 nt: 2936 + fragments 600-699 nt: 2430 + fragments 700-799 nt: 2004 + fragments 800-899 nt: 1789 + fragments 900-999 nt: 1496 +