view test-data/chr21.l150.apeki.txt @ 22:062399f3787f draft

new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
author koen
date Tue, 26 Jan 2016 07:38:36 -0500
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input parameters:
	enzyme name used: ApeKI
	enzyme cut sequence: G^CWGC
	for bedfile, genome name used: genome
	read length provided: 150
minimum fragment size: 100
maximum fragment size: 1000

reference sequence(s) analyzed:
	chr21.fa

total cuts for enzyme (ApeKI): 62623

looked at 62624 fragments in total
35553 fragments <= 1000 nt and >= 100 nt
	fragments in range per reference sequence:
		chr21 had 35553 fragments
	distances between fragments in range:
		<=1kb 28216 fragment pairs
		1kb-10kb 7209 fragment pairs
		10kb-100kb 125 fragment pairs
		100kb-1Mb 1 fragment pairs
		1Mb-10Mb 1 fragment pairs
		>10Mb 0 fragment pairs
	fragments less than 100 nt: 16329 

	fragments 100-199 nt: 9755
	fragments 200-299 nt: 6571
	fragments 300-399 nt: 4853
	fragments 400-499 nt: 3701
	fragments 500-599 nt: 2936
	fragments 600-699 nt: 2430
	fragments 700-799 nt: 2004
	fragments 800-899 nt: 1789
	fragments 900-999 nt: 1496