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1 application: gdistincc [
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2 documentation: "Calculates the distance between two loci in circular chromosomes"
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3 groups: "Nucleic:Composition"
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4 embassy: "gembassy"
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5 relations: "EDAM_topic:3073 Nucleic acid feature detection"
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6 relations: "EDAM_operation:0415 Nucleic acid feature prediction"
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7 ]
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8
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9 section: input [
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10 information: "Input section"
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11 type: "page"
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12 ]
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13
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14 seqall: sequence [
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15 parameter: "Y"
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16 type: "nucleotide"
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17 features: "Y"
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18 relations: "EDAM_data:0849 Sequence record"
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19 ]
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20
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21 integer: first [
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22 parameter: "Y"
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23 information: "Position to find the distance"
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24 ]
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25
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26 boolean: accid [
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27 information: "Include to use sequence accession ID as query"
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28 default: "Y"
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29 ]
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30
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31 endsection: input
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32
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33 section: advanced [
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34 information: "Advanced section"
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35 type: "page"
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36 ]
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37
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38 integer: second [
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39 information: "If the second position is negative, position of replication origin is used"
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40 default: "-1"
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41 ]
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42
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43 endsection: advanced
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44
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45 section: output [
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46 information: "Output section"
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47 type: "page"
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48 ]
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49
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50 outfile: outfile [
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51 parameter: "Y"
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52 relations: "EDAM_data:3127 Nucleic acid features (replication and
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53 recombination)"
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54 ]
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55
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56 endsection: output
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