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1 application: genret [
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2 documentation: "Retrieves various gene features from genome flatfile"
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3 groups: "Edit, Data retrieval, Feature tables"
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4 embassy: "gembassy"
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5 relations: "EDAM_topic:0160 Sequence sites and features"
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6 relations: "EDAM_topic:0091 Data handling"
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7 relations: "EDAM_operation:2422 Data retrieval"
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8 ]
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9
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10 section: input [
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11 information: "Input section"
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12 type: "page"
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13 ]
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14
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15 seqall: sequence [
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16 parameter: "Y"
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17 type: "nucleotide"
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18 features: "Y"
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19 relations: "EDAM_data:0849 Sequence record"
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20 ]
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21
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22 string: gene [
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23 parameter: "Y"
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24 information: "List of gene name(s) to report"
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25 knowntype: "sequence id list"
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26 default: "*"
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27 ]
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28
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29 string: access [
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30 parameter: "Y"
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31 information: "Name of gene feature to access"
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32 knowntype: "feature key"
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33 word: "Y"
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34 ]
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35
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36 endsection: input
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37
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38 section: advanced [
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39 information: "Advanced section"
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40 type: "page"
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41 ]
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42
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43 string: argument [
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44 information: "Extra arguments to pass to method"
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45 knowntype: "string"
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46 default: ""
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47 ]
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48
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49 boolean: accid [
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50 information: "Include to use sequence accession ID as query"
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51 default: "N"
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52 ]
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53
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54 endsection: advanced
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55
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56 section: output [
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57 information: "Output section"
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58 type: "page"
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59 ]
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60
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61 outfile: outfile [
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62 parameter: "Y"
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63 extension: "$(access).genret"
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64 information: "Sequence output file"
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65 knowntype: "sequence data"
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66 ]
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67
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68 endsection: output
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