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1 /******************************************************************************
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2 ** @source gentrez
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3 **
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4 ** Search NCBI Entrez in G-language Shell
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5 **
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6 ** @author Copyright (C) 2012 Hidetoshi Itaya
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7 ** @version 1.0.3
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8 ** @modified 2012/1/20 Hidetoshi Itaya Created!
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9 ** @modified 2013/6/16 Revision 1
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10 ** @modified 2015/2/7 Refactor
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11 ** @@
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12 **
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13 ** This program is free software; you can redistribute it and/or
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14 ** modify it under the terms of the GNU General Public License
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15 ** as published by the Free Software Foundation; either version 2
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16 ** of the License, or (at your option) any later version.
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17 **
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18 ** This program is distributed in the hope that it will be useful,
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19 ** but WITHOUT ANY WARRANTY; without even the implied warranty of
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20 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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21 ** GNU General Public License for more details.
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22 **
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23 ** You should have received a copy of the GNU General Public License
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24 ** along with this program; if not, write to the Free Software
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25 ** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
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26 ******************************************************************************/
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27
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28
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29 #include "emboss.h"
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30 #include "soapH.h"
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31 #include "GLANGSoapBinding.nsmap"
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32 #include "soapClient.c"
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33 #include "soapC.c"
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34 #include "../gsoap/stdsoap2.c"
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35 #include "glibs.h"
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36
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37
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38
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39
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40 /* @prog gentrez **************************************************************
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41 **
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42 ** Search NCBI Entrez in G-language Shell
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43 **
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44 ******************************************************************************/
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45
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46 int main(int argc, char *argv[])
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47 {
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48 embInitPV("gentrez", argc, argv, "GEMBASSY", "1.0.3");
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49
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50 struct soap soap;
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51
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52 AjPStr database = NULL;
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53 AjPStr query = NULL;
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54
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55 char *in0;
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56 char *in1;
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57 char *result;
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58
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59 AjPFile outf = NULL;
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60
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61 database = ajAcdGetString("database");
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62 query = ajAcdGetString("query");
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63 outf = ajAcdGetOutfile("outfile");
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64
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65 in0 = ajCharNewS(database);
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66 in1 = ajCharNewS(query);
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67
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68 soap_init(&soap);
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69
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70 if(soap_call_ns1__entrez(
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71 &soap,
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72 NULL,
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73 NULL,
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74 in0,
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75 in1,
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76 &result
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77 ) == SOAP_OK)
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78 {
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79 if(result)
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80 {
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81 ajFmtPrintF(outf, "%s", result);
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82 }
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83 else
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84 {
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85 ajFmtPrintF(outf, "No results found.\n");
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86 }
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87 }
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88 else
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89 {
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90 soap_print_fault(&soap, stderr);
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91 }
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92
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93 soap_destroy(&soap);
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94 soap_end(&soap);
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95 soap_done(&soap);
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96
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97 ajFileClose(&outf);
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98
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99 AJFREE(in0);
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100 AJFREE(in1);
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101
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102 ajStrDel(&database);
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103 ajStrDel(&query);
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104
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105 embExit();
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106
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107 return 0;
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108 }
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