Mercurial > repos > ktnyt > gembassy

comparison GEMBASSY-1.0.3/acd/gconsensusz.acd @ 0:8300eb051bea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial upload
author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:8300eb051bea
1 application: gconsensusz [
2 documentation: "Calculates consensus in given array of sequences"
3 groups: "Nucleic:Composition"
4 embassy: "gembassy"
5 relations: "EDAM_topic:0157 Sequence composition analysis"
6 relations: "EDAM_operation:0377 Sequence composition calculation
7 (nucleic acid)"
8 ]
9
10 section: input [
11 information: "Input section"
12 type: "page"
13 ]
14
15 seqall: sequence [
16 parameter: "Y"
17 type: "nucleotide"
18 relations: "EDAM_data:0850 Sequence set"
19 ]
20
21 endsection: input
22
23 section: advanced [
24 information: "Advanced section"
25 type: "page"
26 ]
27
28 integer: high [
29 information: "Z value greater than which is significant"
30 default: "1"
31 ]
32
33 float: low [
34 information: "Z value less than which is insignificant"
35 default: "0.2"
36 ]
37
38 endsection: advanced
39
40 section: output [
41 information: "Output section"
42 type: "page"
43 ]
44
45 toggle: plot [
46 information: "Include to plot result"
47 default: "Y"
48 ]
49
50 xygraph: graph [
51 standard: "$(plot)"
52 gtitle: "gconsensusz of $(sequence.name)"
53 ]
54
55 outfile: outfile [
56 standard: "@(!$(plot))"
57 nullok: "Y"
58 nulldefault: "$(plot)"
59 information: "Program compseq output file (optional)"
60 knowntype: "compseq output"
61 relations: "EDAM_data:3086 Nucleic acid sequence composition"
62 ]
63
64 endsection: output