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1 application: gconsensusz [
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2 documentation: "Calculates consensus in given array of sequences"
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3 groups: "Nucleic:Composition"
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4 embassy: "gembassy"
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5 relations: "EDAM_topic:0157 Sequence composition analysis"
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6 relations: "EDAM_operation:0377 Sequence composition calculation
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7 (nucleic acid)"
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8 ]
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9
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10 section: input [
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11 information: "Input section"
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12 type: "page"
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13 ]
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14
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15 seqall: sequence [
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16 parameter: "Y"
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17 type: "nucleotide"
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18 relations: "EDAM_data:0850 Sequence set"
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19 ]
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20
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21 endsection: input
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22
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23 section: advanced [
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24 information: "Advanced section"
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25 type: "page"
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26 ]
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27
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28 integer: high [
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29 information: "Z value greater than which is significant"
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30 default: "1"
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31 ]
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32
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33 float: low [
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34 information: "Z value less than which is insignificant"
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35 default: "0.2"
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36 ]
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37
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38 endsection: advanced
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39
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40 section: output [
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41 information: "Output section"
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42 type: "page"
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43 ]
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44
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45 toggle: plot [
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46 information: "Include to plot result"
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47 default: "Y"
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48 ]
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49
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50 xygraph: graph [
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51 standard: "$(plot)"
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52 gtitle: "gconsensusz of $(sequence.name)"
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53 ]
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54
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55 outfile: outfile [
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56 standard: "@(!$(plot))"
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57 nullok: "Y"
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58 nulldefault: "$(plot)"
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59 information: "Program compseq output file (optional)"
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60 knowntype: "compseq output"
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61 relations: "EDAM_data:3086 Nucleic acid sequence composition"
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62 ]
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63
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64 endsection: output
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