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comparison GEMBASSY-1.0.3/acd/gdistincc.acd @ 0:8300eb051bea draft

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author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
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-1:000000000000 0:8300eb051bea
1 application: gdistincc [
2 documentation: "Calculates the distance between two loci in circular chromosomes"
3 groups: "Nucleic:Composition"
4 embassy: "gembassy"
5 relations: "EDAM_topic:3073 Nucleic acid feature detection"
6 relations: "EDAM_operation:0415 Nucleic acid feature prediction"
7 ]
8
9 section: input [
10 information: "Input section"
11 type: "page"
12 ]
13
14 seqall: sequence [
15 parameter: "Y"
16 type: "nucleotide"
17 features: "Y"
18 relations: "EDAM_data:0849 Sequence record"
19 ]
20
21 integer: first [
22 parameter: "Y"
23 information: "Position to find the distance"
24 ]
25
26 boolean: accid [
27 information: "Include to use sequence accession ID as query"
28 default: "Y"
29 ]
30
31 endsection: input
32
33 section: advanced [
34 information: "Advanced section"
35 type: "page"
36 ]
37
38 integer: second [
39 information: "If the second position is negative, position of replication origin is used"
40 default: "-1"
41 ]
42
43 endsection: advanced
44
45 section: output [
46 information: "Output section"
47 type: "page"
48 ]
49
50 outfile: outfile [
51 parameter: "Y"
52 relations: "EDAM_data:3127 Nucleic acid features (replication and
53 recombination)"
54 ]
55
56 endsection: output