Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/genret.acd @ 0:8300eb051bea draft
Initial upload
author | ktnyt |
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date | Fri, 26 Jun 2015 05:19:29 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GEMBASSY-1.0.3/acd/genret.acd Fri Jun 26 05:19:29 2015 -0400 @@ -0,0 +1,68 @@ +application: genret [ + documentation: "Retrieves various gene features from genome flatfile" + groups: "Edit, Data retrieval, Feature tables" + embassy: "gembassy" + relations: "EDAM_topic:0160 Sequence sites and features" + relations: "EDAM_topic:0091 Data handling" + relations: "EDAM_operation:2422 Data retrieval" +] + +section: input [ + information: "Input section" + type: "page" +] + + seqall: sequence [ + parameter: "Y" + type: "nucleotide" + features: "Y" + relations: "EDAM_data:0849 Sequence record" + ] + + string: gene [ + parameter: "Y" + information: "List of gene name(s) to report" + knowntype: "sequence id list" + default: "*" + ] + + string: access [ + parameter: "Y" + information: "Name of gene feature to access" + knowntype: "feature key" + word: "Y" + ] + +endsection: input + +section: advanced [ + information: "Advanced section" + type: "page" +] + + string: argument [ + information: "Extra arguments to pass to method" + knowntype: "string" + default: "" + ] + + boolean: accid [ + information: "Include to use sequence accession ID as query" + default: "N" + ] + +endsection: advanced + +section: output [ + information: "Output section" + type: "page" +] + + outfile: outfile [ + parameter: "Y" + extension: "$(access).genret" + information: "Sequence output file" + knowntype: "sequence data" + ] + +endsection: output