Mercurial > repos > kyost > atac_primer_tool

annotate concatenate_ordered.xml @ 2:6f5ce4e865a5 draft

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author kyost
date Sat, 28 Apr 2018 19:45:57 -0400
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1 <tool id="concatenate_ordered" name="Concatenate Ordered Dataset Collection" version="0.1.0">
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2 <description> Concatenates files in dataset collection based on orginial file name stored in first column.</description>
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3 <requirements>
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4 </requirements>
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5 <stdio>
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6 <exit_code range="1:" />
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7 </stdio>
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8 <command><![CDATA[
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9 $__tool_directory__/./concatenate_ordered.bash "$input1" "$output1"
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10 ]]></command>
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11 <inputs>
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12 <param type="data" name="input1" format="tabular" multiple="true" label="Read Counts Files"/>
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13 </inputs>
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14 <outputs>
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15 <data name="output1" format="tabular" label="Read Counts"/>
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="input1" value="dataset_692.dat,dataset_684.dat,dataset_688.dat,dataset_686.dat,dataset_690.dat"/>
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20 <output name="output1" file="read_counts_ordered.txt"/>
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21 </test>
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22 </tests>
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23 <help><![CDATA[
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24 This tools takes a series of input files and concatenates the contents in order according to the alphabetical order of the first column of the input files containing the original file name.
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25 ]]></help>
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26 <citations>
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27 <citation type="doi">doi:10.1038/nmeth.4663</citation>
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28 </citations>
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29 </tool>