--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/concatenate_ordered.xml	Sat Apr 28 15:07:26 2018 -0400
@@ -0,0 +1,29 @@
+<tool id="concatenate_ordered" name="Concatenate Ordered Dataset Collection" version="0.1.0">
+    <description> Concatenates files in dataset collection based on orginial file name stored in first column.</description>
+    <requirements>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command><![CDATA[
+		$__tool_directory__/./concatenate_ordered.bash "$input1" "$output1"
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="tabular" multiple="true" label="Read Counts Files"/>
+    </inputs>
+    <outputs>
+        <data name="output1" format="tabular" label="Read Counts"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="dataset_692.dat,dataset_684.dat,dataset_688.dat,dataset_686.dat,dataset_690.dat"/>
+            <output name="output1" file="read_counts_ordered.txt"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        This tools takes a series of input files and concatenates the contents in order according to the alphabetical order of the first column of the input files containing the original file name.
+    ]]></help>
+    <citations>
+        <citation type="doi">doi:10.1038/nmeth.4663</citation>
+    </citations>
+</tool>