Mercurial > repos > kyost > atac_primer_tool
comparison concatenate_ordered.xml @ 0:fd3ea97a96bc draft
planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
| author | kyost |
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| date | Sat, 28 Apr 2018 15:07:26 -0400 |
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| -1:000000000000 | 0:fd3ea97a96bc |
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| 1 <tool id="concatenate_ordered" name="Concatenate Ordered Dataset Collection" version="0.1.0"> | |
| 2 <description> Concatenates files in dataset collection based on orginial file name stored in first column.</description> | |
| 3 <requirements> | |
| 4 </requirements> | |
| 5 <stdio> | |
| 6 <exit_code range="1:" /> | |
| 7 </stdio> | |
| 8 <command><![CDATA[ | |
| 9 $__tool_directory__/./concatenate_ordered.bash "$input1" "$output1" | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param type="data" name="input1" format="tabular" multiple="true" label="Read Counts Files"/> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="output1" format="tabular" label="Read Counts"/> | |
| 16 </outputs> | |
| 17 <tests> | |
| 18 <test> | |
| 19 <param name="input1" value="dataset_692.dat,dataset_684.dat,dataset_688.dat,dataset_686.dat,dataset_690.dat"/> | |
| 20 <output name="output1" file="read_counts_ordered.txt"/> | |
| 21 </test> | |
| 22 </tests> | |
| 23 <help><![CDATA[ | |
| 24 This tools takes a series of input files and concatenates the contents in order according to the alphabetical order of the first column of the input files containing the original file name. | |
| 25 ]]></help> | |
| 26 <citations> | |
| 27 <citation type="doi">doi:10.1038/nmeth.4663</citation> | |
| 28 </citations> | |
| 29 </tool> |