Mercurial > repos > labis-app > galaxy_proteomics

annotate t-test.xml @ 0:ba070efb6f78 draft

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author labis-app
date Tue, 03 Jul 2018 17:34:13 -0400
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1 <?xml version="1.0"?>
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2 <tool id="t-test" name="T-Test" version="1.0" hidden="false">
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3 <description>
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4 </description>
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5 <command interpreter="Rscript">
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6 t-test.R --inputfile_name=$input --type=$t_test_type --outputfile_name=$output
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7 </command>
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8
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9 <inputs>
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10 <param format="tabular" name="input" type="data" label="Input table"/>
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11 <param format="txt" name="t_test_type" type="select" label="Type of T-test">
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12 <option value="lfqlog2"> Log2 of LFQ Intensity </option>
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13 <option value="intensity"> Intensity </option>
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14 <option value="mscount"> MS Count </option>
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15 </param>
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16 </inputs>
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17
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18 <outputs>
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19 <data format="tabular" name="output" label="Complete table with p-values and significance on ${input.name}"/>
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20 </outputs>
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21
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22 <tests>
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23 <test>
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24 <param name="input" value="f1.fasta"/>
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25 <param name="t_test_type" value="Intensity"/>
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26 <output name="output" file="result_T_test.csv"/>
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27 </test>
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28 </tests>
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29
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30 <help>
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31 ** What it does **
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32 This tool executes an RScript that produces a p-values colum on the table.
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33 </help>
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34
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35 <citations>
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36 <citation type="bibtex">
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37 @misc{Concatenate,
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38 author = {Application, Labis},
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39 year = 2018,
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40 title = Concatenate,
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41 publisher = labisapplications
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42 }
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43 </citation>
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44 </citations>
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45 </tool>