Mercurial > repos > labis-app > galaxy_proteomics

comparison selectproteinids.xml @ 0:ba070efb6f78 draft

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planemo upload commit 13e72e84c523bda22bda792bbebf4720d28542d5-dirty
author labis-app
date Tue, 03 Jul 2018 17:34:13 -0400
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1 <?xml version="1.0"?>
2 <tool id="selectproteinids" name="Filter ids" version="1.0" hidden="false">
3
4 <description></description>
5 <command interpreter="perl">
6 selectproteinids.pl $input $maintaincon $out_file
7 </command>
8
9 <inputs>
10 <param format="tabular" name="input" type="data" label="Input table"/>
11
12 <param name="maintaincon" type="select" display="radio" label="Maintain contaminants">
13 <option value="yes">Yes</option>
14 <option value="no">No</option>
15 </param>
16
17 </inputs>
18
19 <outputs>
20 <data format="tabular" name="out_file" label="${input.name} filtered"/>
21 </outputs>
22
23 <tests>
24 <test>
25 <param name="input" value="protein_ids_simple.csv"/>
26 <param name="maintaincon" value="yes"/>
27 <output name="out_file" file="proteinGroups_csv_filtered_with_contaminants.tabular"/>
28 </test>
29
30 <test>
31 <param name="input" value="protein_ids_simple.csv"/>
32 <param name="maintaincon" value="no"/>
33 <output name="out_file" file="proteinGroups_csv_filtered_without_contaminants.tabular"/>
34 </test>
35
36 </tests>
37
38 <help>
39
40 Input: Protein Groups from MaxQuant
41
42
43 Output: Table with id's got from MaxQuant Protein Groups
44
45 </help>
46
47 <citations>
48 <citation type="bibtex">
49 @misc{Concatenate,
50 author = {Application, Labis},
51 year = 2018,
52 title = Concatenate,
53 publisher = labisapplications
54 }
55 </citation>
56 </citations>
57 </tool>