Mercurial > repos > labis-app > galaxy_proteomics

annotate selectproteinids.xml @ 0:ba070efb6f78 draft

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author labis-app
date Tue, 03 Jul 2018 17:34:13 -0400
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1 <?xml version="1.0"?>
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2 <tool id="selectproteinids" name="Filter ids" version="1.0" hidden="false">
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3
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4 <description></description>
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5 <command interpreter="perl">
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6 selectproteinids.pl $input $maintaincon $out_file
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7 </command>
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8
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9 <inputs>
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10 <param format="tabular" name="input" type="data" label="Input table"/>
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11
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12 <param name="maintaincon" type="select" display="radio" label="Maintain contaminants">
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13 <option value="yes">Yes</option>
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14 <option value="no">No</option>
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15 </param>
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16
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17 </inputs>
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18
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19 <outputs>
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20 <data format="tabular" name="out_file" label="${input.name} filtered"/>
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21 </outputs>
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22
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23 <tests>
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24 <test>
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25 <param name="input" value="protein_ids_simple.csv"/>
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26 <param name="maintaincon" value="yes"/>
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27 <output name="out_file" file="proteinGroups_csv_filtered_with_contaminants.tabular"/>
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28 </test>
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29
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30 <test>
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31 <param name="input" value="protein_ids_simple.csv"/>
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32 <param name="maintaincon" value="no"/>
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33 <output name="out_file" file="proteinGroups_csv_filtered_without_contaminants.tabular"/>
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34 </test>
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35
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36 </tests>
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37
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38 <help>
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39
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40 Input: Protein Groups from MaxQuant
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41
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42
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43 Output: Table with id's got from MaxQuant Protein Groups
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44
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45 </help>
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46
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47 <citations>
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48 <citation type="bibtex">
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49 @misc{Concatenate,
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50 author = {Application, Labis},
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51 year = 2018,
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52 title = Concatenate,
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53 publisher = labisapplications
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54 }
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55 </citation>
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56 </citations>
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57 </tool>